STRINGSTRING
DVU_3002 DVU_3002 DVU_3001 DVU_3001 DVU_3000 DVU_3000 DVU_3003 DVU_3003 DVU_3004 DVU_3004 DVU_0101 DVU_0101 DVU_2997 DVU_2997 DVU_0449 DVU_0449 DVU_2999 DVU_2999 glyA glyA DVU_3006 DVU_3006
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_3002Conserved domain protein. (382 aa)    
Predicted Functional Partners:
DVU_3001
Conserved domain protein; Identified by similarity to OMNI:CC3255.
  
    0.822
DVU_3000
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.805
DVU_3003
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
    0.648
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
    0.565
DVU_0101
Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209.
  
 
 0.557
DVU_2997
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.532
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 
 0.527
DVU_2999
methionyl-tRNA formyltransferase, putative; Identified by match to protein family HMM PF00551.
  
  
 0.522
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism; Belongs to the SHMT family.
  
 
 0.521
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP:P39626; similar to GP:10179847; match to protein family HMM PF02348.
 
     0.511
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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