STRINGSTRING
DVU_3008 DVU_3008 DVU_0351 DVU_0351 DVU_3006 DVU_3006 DVU_3004 DVU_3004 spsF spsF DVU_3010 DVU_3010 DVU_3005 DVU_3005 DVU_3011 DVU_3011 DVU_3009 DVU_3009 DVU_3007 DVU_3007 DVU_1625 DVU_1625
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3008Identified by match to protein family HMM PF03102. (358 aa)    
Predicted Functional Partners:
DVU_0351
Cytidine 5'monophosphate N-acetylneuraminic acid synthetase/polysaccharide biosynthesis protein; Identified by similarity to SP:P39627; similar to GP:4741793.
 
  
 0.973
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP:P39626; similar to GP:10179847; match to protein family HMM PF02348.
 
  
 0.972
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
  
 0.900
spsF
Spore coat polysaccharide biosynthesis protein spsF; Identified by match to protein family HMM PF02348.
 
  
 0.884
DVU_3010
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP:22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.860
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.827
DVU_3011
Conserved hypothetical protein; Identified by similarity to OMNI:CC2858.
  
    0.788
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
    0.784
DVU_3007
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.783
DVU_1625
Phosphatase, YrbI family; Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670.
   
 0.628
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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