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DVU_3013 DVU_3013 DVU_1214 DVU_1214 DVU_3015 DVU_3015 DVU_3014 DVU_3014 polA polA DVU_3010 DVU_3010 DVU_3005 DVU_3005 DVU_3012 DVU_3012 DVU_0449 DVU_0449 DVU_3009 DVU_3009 DVU_3008 DVU_3008
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_3013Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (568 aa)    
Predicted Functional Partners:
DVU_1214
Identified by match to protein family HMM PF02366.
 
  
 0.894
DVU_3015
Conserved domain protein; Identified by similarity to OMNI:NT01MC1323.
  
    0.814
DVU_3014
Asparagine synthetase, glutamine-hydrolyzing; Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
  
  
 0.804
polA
DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
  
  
 0.696
DVU_3010
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP:22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.664
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.659
DVU_3012
Membrane protein, putative.
  
    0.611
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.566
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
   
 0.545
DVU_3008
Identified by match to protein family HMM PF03102.
  
  
 0.524
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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