STRINGSTRING
DVU_3039 DVU_3039 DVU_1388 DVU_1388 DVU_2662 DVU_2662 DVU_2409 DVU_2409 DVU_0089 DVU_0089 DVU_3139 DVU_3139 DVU_3266 DVU_3266 DVU_0852 DVU_0852 DVU_2684 DVU_2684 DVU_3040 DVU_3040 DVU_3041 DVU_3041
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3039Conserved hypothetical protein; Identified by similarity to GP:9949385. (241 aa)    
Predicted Functional Partners:
DVU_1388
Conserved hypothetical protein; Identified by similarity to OMNI:SO1143.
  
     0.744
DVU_2662
Conserved hypothetical protein; Identified by similarity to SP:P54952.
  
    0.699
DVU_2409
Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497.
  
    0.682
DVU_0089
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0583.
  
    0.667
DVU_3139
Bacterial extracellular solute-binding protein, family 3; Identified by match to protein family HMM PF00497.
  
     0.667
DVU_3266
Conserved hypothetical protein.
  
     0.638
DVU_0852
Extracellular solute-binding protein, putative.
  
     0.619
DVU_2684
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.573
DVU_3040
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.509
DVU_3041
Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034.
   
   0.434
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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