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DVU_3041 DVU_3041 DVU_1968 DVU_1968 DVU_3212 DVU_3212 DVU_3195 DVU_3195 DVU_1815 DVU_1815 trx trx DVU_3042 DVU_3042 DVU_0378 DVU_0378 DVU_3040 DVU_3040 DVU_2484 DVU_2484 DVU_2944 DVU_2944
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_3041Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034. (93 aa)    
Predicted Functional Partners:
DVU_1968
Oxidoreductase, putative.
   
 
 0.827
DVU_3212
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852.
  
 
 0.796
DVU_3195
Lipoprotein, putative; Identified by similarity to OMNI:NTL01CJ01286.
  
   
 0.715
DVU_1815
Cytochrome c oxidase, subunit I, putative; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
  
 0.667
trx
Thioredoxin; Identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
   
  
 0.666
DVU_3042
Lipoprotein, putative; Identified by match to protein family HMM PF06004.
  
    0.656
DVU_0378
Thioredoxin, putative; Identified by similarity to SP:P80579.
   
  
 0.597
DVU_3040
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.575
DVU_2484
Identified by match to protein family HMM PF00034.
  
  
 0.539
DVU_2944
Identified by match to protein family HMM PF03734.
  
     0.524
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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