STRINGSTRING
DVU_3096 DVU_3096 fur-2 fur-2 DVU_3097 DVU_3097 rr rr rdl rdl DVU_3098 DVU_3098
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_3096Hypothetical protein; Identified by Glimmer2; putative. (83 aa)    
Predicted Functional Partners:
fur-2
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
       0.682
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
    0.636
rr
Rubrerythrin; May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide.
       0.562
rdl
Identified by match to protein family HMM PF00301; Belongs to the rubredoxin family.
       0.531
DVU_3098
Hypothetical protein; Identified by Glimmer2; putative.
       0.443
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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