STRINGSTRING
DVU_3097 DVU_3097 DVU_0060 DVU_0060 DVU_2817 DVU_2817 DVU_0061 DVU_0061 DVU_2816 DVU_2816 DVU_0062 DVU_0062 DVU_0058 DVU_0058 DVU_1018 DVU_1018 DVU_0125 DVU_0125 DVU_1017 DVU_1017 DVU_2439 DVU_2439
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3097Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (439 aa)    
Predicted Functional Partners:
DVU_0060
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.975
DVU_2817
Multidrug resistance protein; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.968
DVU_0061
Multidrug resistance protein, putative; Identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 0.965
DVU_2816
Multidrug resistance protein; Identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.956
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
  
0.919
DVU_0058
Efflux transporter, RND family, MFP subunit; Identified by similarity to OMNI:CC1787; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.841
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.835
DVU_0125
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.813
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 0.803
DVU_2439
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.802
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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