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nhaC-2 nhaC-2 DVU_0331 DVU_0331 DVU_2580 DVU_2580 DVU_2645 DVU_2645 putA putA DVU_0392 DVU_0392 aspB aspB DVU_0841 DVU_0841 DVU_3109 DVU_3109 DVU_3110 DVU_3110 DVU_1082 DVU_1082
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
nhaC-2Na+/H+ antiporter NhaC; Identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931. (475 aa)    
Predicted Functional Partners:
DVU_0331
Sensory box histidine kinase, putative; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.732
DVU_2580
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
      
 0.710
DVU_2645
Na+/H+ antiporter family protein; Identified by similarity to SP:P27611.
  
    0.635
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.511
DVU_0392
Aromatic aminotransferase; Identified by similarity to GP:14278621; match to protein family HMM PF00155.
   
  
 0.478
aspB
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
   
  
 0.476
DVU_0841
Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.
   
  
 0.475
DVU_3109
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
    0.461
DVU_3110
L-aspartate oxidase, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910.
  
    0.441
DVU_1082
3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612.
   
 0.427
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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