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DVU_3110 DVU_3110 sucCD sucCD frdC frdC DVU_2674 DVU_2674 frdB frdB DVU_3109 DVU_3109 poR poR DVU_1772 DVU_1772 DVU_3292 DVU_3292 aprB aprB DVU_2825 DVU_2825
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_3110L-aspartate oxidase, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910. (573 aa)    
Predicted Functional Partners:
sucCD
succinyl-CoA synthase, beta/alpha subunits; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 
 0.974
frdC
Fumarate reductase, cytochrome b subunit; Identified by similarity to SP:P17413.
  
 0.969
DVU_2674
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 0.956
frdB
Fumarate reductase, iron-sulfur protein; Identified by similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM TIGR00384.
 
 0.948
DVU_3109
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
  
 0.938
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.932
DVU_1772
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070.
  
 
 0.878
DVU_3292
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070.
  
 
 0.834
aprB
Adenylylsulphate reductase, beta subunit; Identified by similarity to GP:7109234; match to protein family HMM PF00037; match to protein family HMM TIGR02060.
   
 
 0.814
DVU_2825
Pyruvate formate-lyase 1 activating enzyme, putative; Identified by similarity to SP:P09374; similar to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055.
 
 
 0.799
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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