STRINGSTRING
DVU_3112 DVU_3112 DVU_2896 DVU_2896 DVU_2077 DVU_2077 DVU_2937 DVU_2937 DVU_0311 DVU_0311 DVU_1464 DVU_1464 DVU_3201 DVU_3201 DVU_1445 DVU_1445 DVU_0318 DVU_0318 DVU_1447 DVU_1447 DVU_2763 DVU_2763
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3112TPR domain protein; Identified by match to protein family HMM PF00515. (267 aa)    
Predicted Functional Partners:
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.817
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
  
 
   0.788
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
 
 
 0.788
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP:P31068.
 
  
 0.784
DVU_1464
Identified by match to protein family HMM PF01075.
 
    0.775
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.769
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
  
     0.766
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   
 0.763
DVU_1447
CgeB family protein.
  
    0.763
DVU_2763
TPR/GGDEF domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 
 0.763
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.