node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_3112 | DVU_3115 | DVU_3112 | DVU_3115 | TPR domain protein; Identified by match to protein family HMM PF00515. | Hypothetical protein; Identified by Glimmer2; putative. | 0.410 |
DVU_3112 | carA | DVU_3112 | DVU_3113 | TPR domain protein; Identified by match to protein family HMM PF00515. | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | 0.668 |
DVU_3112 | kdsB | DVU_3112 | DVU_3114 | TPR domain protein; Identified by match to protein family HMM PF00515. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.652 |
DVU_3115 | DVU_3112 | DVU_3115 | DVU_3112 | Hypothetical protein; Identified by Glimmer2; putative. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.410 |
DVU_3115 | carA | DVU_3115 | DVU_3113 | Hypothetical protein; Identified by Glimmer2; putative. | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | 0.498 |
DVU_3115 | kdsB | DVU_3115 | DVU_3114 | Hypothetical protein; Identified by Glimmer2; putative. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.498 |
DVU_3115 | prfC | DVU_3115 | DVU_3116 | Hypothetical protein; Identified by Glimmer2; putative. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.575 |
carA | DVU_3112 | DVU_3113 | DVU_3112 | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.668 |
carA | DVU_3115 | DVU_3113 | DVU_3115 | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | Hypothetical protein; Identified by Glimmer2; putative. | 0.498 |
carA | kdsB | DVU_3113 | DVU_3114 | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.800 |
carA | prfC | DVU_3113 | DVU_3116 | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.421 |
kdsB | DVU_3112 | DVU_3114 | DVU_3112 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.652 |
kdsB | DVU_3115 | DVU_3114 | DVU_3115 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Hypothetical protein; Identified by Glimmer2; putative. | 0.498 |
kdsB | carA | DVU_3114 | DVU_3113 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | 0.800 |
kdsB | prfC | DVU_3114 | DVU_3116 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.426 |
prfC | DVU_3115 | DVU_3116 | DVU_3115 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Hypothetical protein; Identified by Glimmer2; putative. | 0.575 |
prfC | carA | DVU_3116 | DVU_3113 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Carbamoyl-phosphate synthase, small subunit; Identified by similarity to SP:P25993; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368. | 0.421 |
prfC | kdsB | DVU_3116 | DVU_3114 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.426 |