STRINGSTRING
DVU_3130 DVU_3130 DVU_3354 DVU_3354 DVU_1006 DVU_1006 DVU_3129 DVU_3129 DVU_3128 DVU_3128 pqiB pqiB DVU_3131 DVU_3131 DVU_3132 DVU_3132
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3130Hypothetical protein; Identified by Glimmer2; putative. (70 aa)    
Predicted Functional Partners:
DVU_3354
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.586
DVU_1006
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.584
DVU_3129
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.568
DVU_3128
Lipoprotein, putative; Identified by similarity to OMNI:NTL03PA04964; match to protein family HMM PF03886.
  
    0.550
pqiB
Paraquat-inducible protein B; Identified by similarity to SP:P43671.
  
    0.548
DVU_3131
Transcriptional regulator, putative; Identified by match to protein family HMM PF04198.
  
    0.465
DVU_3132
Glycerol-3-phosphate dehydrogenase, FAD-dependent; Identified by similarity to SP:P18158; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.465
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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