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DVU_3147 DVU_3147 cobQ cobQ DVU_2434 DVU_2434 cobS cobS DVU_2736 DVU_2736 DVU_1386 DVU_1386 DVU_0988 DVU_0988 DVU_3146 DVU_3146 rluB rluB DVU_0026 DVU_0026 DVU_1682 DVU_1682
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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Textmining
[Homology]
Score
DVU_31476-phosphofructo-2-kinase/fructose-2, 6-biphosphatase; Identified by similarity to GP:3309583; match to protein family HMM PF00300; match to protein family HMM PF01591. (420 aa)    
Predicted Functional Partners:
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.594
DVU_2434
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
cobS
Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
  
 0.540
DVU_2736
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.528
DVU_1386
Membrane protein, putative.
  
  
 0.491
DVU_0988
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.486
DVU_3146
Hypothetical protein; Identified by Glimmer2; putative.
       0.485
rluB
Ribosomal large subunit pseudouridine synthase B; Identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
 
    0.480
DVU_0026
Conserved hypothetical protein; Identified by similarity to SP:O31482.
  
  
 0.475
DVU_1682
GAF domain protein; Identified by match to protein family HMM PF01590.
 
    0.464
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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