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DVU_3164 DVU_3164 DVU_3162 DVU_3162 DVU_3163 DVU_3163 DVU_3161 DVU_3161 DVU_0747 DVU_0747 DVU_3165 DVU_3165 DVU_3166 DVU_3166 DVU_1219 DVU_1219 DVU_0981 DVU_0981 DVU_0449 DVU_0449 DVU_3167 DVU_3167
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3164ABC transporter, permease protein; Identified by similarity to OMNI:TM0598; match to protein family HMM PF00528. (277 aa)    
Predicted Functional Partners:
DVU_3162
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547.
 
 0.999
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
 0.999
DVU_3161
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.998
DVU_0747
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.
  
 
 0.936
DVU_3165
Conserved domain protein; Identified by similarity to GP:19886751.
  
    0.780
DVU_3166
alanyl-tRNA synthetase family protein, putative.
       0.608
DVU_1219
Conserved hypothetical protein; Identified by similarity to GP:6724082.
  
  
 0.579
DVU_0981
Multiphosphoryl transfer protein, putative; Identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.
     
 0.483
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
     
 0.459
DVU_3167
Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.
  
  
 0.447
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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