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DVU_3166 DVU_3166 DVU_3163 DVU_3163 DVU_3165 DVU_3165 DVU_3164 DVU_3164 DVU_3167 DVU_3167 DVU_3162 DVU_3162 hemL hemL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_3166alanyl-tRNA synthetase family protein, putative. (218 aa)    
Predicted Functional Partners:
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
  
    0.614
DVU_3165
Conserved domain protein; Identified by similarity to GP:19886751.
  
    0.610
DVU_3164
ABC transporter, permease protein; Identified by similarity to OMNI:TM0598; match to protein family HMM PF00528.
       0.608
DVU_3167
Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.
       0.533
DVU_3162
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547.
       0.453
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Identified by similarity to SP:P30949; match to protein family HMM PF00202; match to protein family HMM TIGR00713; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
       0.410
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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