STRINGSTRING
DVU_3190 DVU_3190 DVU_1682 DVU_1682 DVU_0810 DVU_0810 DVU_2459 DVU_2459 DVU_1589 DVU_1589 DVU_2460 DVU_2460 lptD lptD DVU_0843 DVU_0843 DVU_3221 DVU_3221 DVU_3352 DVU_3352 DVU_3189 DVU_3189
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3190Hypothetical protein; Identified by Glimmer2; putative. (555 aa)    
Predicted Functional Partners:
DVU_1682
GAF domain protein; Identified by match to protein family HMM PF01590.
 
  
 0.783
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
DVU_2459
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.771
DVU_1589
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.769
DVU_2460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.764
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
    0.757
DVU_0843
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.741
DVU_3221
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.737
DVU_3352
Lipoprotein, putative.
  
    0.731
DVU_3189
Identified by match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.726
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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