node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0443 | DVU_1194 | DVU_0443 | DVU_1194 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | Hypothetical protein; Identified by Glimmer2; putative. | 0.933 |
DVU_0443 | DVU_3203 | DVU_0443 | DVU_3203 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | DNA polymerase III, delta prime subunit, putative. | 0.918 |
DVU_0443 | dnaE | DVU_0443 | DVU_1353 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594. | 0.943 |
DVU_0443 | dnaN | DVU_0443 | DVU_0002 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.940 |
DVU_0443 | dnaX | DVU_0443 | DVU_3198 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunits, putative; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.941 |
DVU_0443 | topA | DVU_0443 | DVU_3389 | Exonulcease, putative; Identified by match to protein family HMM PF00929. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.578 |
DVU_1194 | DVU_0443 | DVU_1194 | DVU_0443 | Hypothetical protein; Identified by Glimmer2; putative. | Exonulcease, putative; Identified by match to protein family HMM PF00929. | 0.933 |
DVU_1194 | DVU_3203 | DVU_1194 | DVU_3203 | Hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, delta prime subunit, putative. | 0.992 |
DVU_1194 | dnaB | DVU_1194 | DVU_0959 | Hypothetical protein; Identified by Glimmer2; putative. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.519 |
DVU_1194 | dnaE | DVU_1194 | DVU_1353 | Hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594. | 0.993 |
DVU_1194 | dnaN | DVU_1194 | DVU_0002 | Hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.992 |
DVU_1194 | dnaX | DVU_1194 | DVU_3198 | Hypothetical protein; Identified by Glimmer2; putative. | DNA polymerase III, gamma and tau subunits, putative; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.993 |
DVU_1194 | topA | DVU_1194 | DVU_3389 | Hypothetical protein; Identified by Glimmer2; putative. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.530 |
DVU_3199 | dnaX | DVU_3199 | DVU_3198 | Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III, gamma and tau subunits, putative; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.950 |
DVU_3199 | recR | DVU_3199 | DVU_3200 | Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.981 |
DVU_3203 | DVU_0443 | DVU_3203 | DVU_0443 | DNA polymerase III, delta prime subunit, putative. | Exonulcease, putative; Identified by match to protein family HMM PF00929. | 0.918 |
DVU_3203 | DVU_1194 | DVU_3203 | DVU_1194 | DNA polymerase III, delta prime subunit, putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.992 |
DVU_3203 | dnaE | DVU_3203 | DVU_1353 | DNA polymerase III, delta prime subunit, putative. | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594. | 0.993 |
DVU_3203 | dnaN | DVU_3203 | DVU_0002 | DNA polymerase III, delta prime subunit, putative. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.999 |
DVU_3203 | dnaX | DVU_3203 | DVU_3198 | DNA polymerase III, delta prime subunit, putative. | DNA polymerase III, gamma and tau subunits, putative; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.995 |