STRINGSTRING
DVU_3201 DVU_3201 DVU_1447 DVU_1447 DVU_1465 DVU_1465 DVU_1464 DVU_1464 DVU_0411 DVU_0411 DVU_0902 DVU_0902 DVU_2896 DVU_2896 DVU_0318 DVU_0318 DVU_1445 DVU_1445 DVU_1446 DVU_1446 DVU_3112 DVU_3112
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3201Hypothetical protein; Identified by Glimmer2; putative. (353 aa)    
Predicted Functional Partners:
DVU_1447
CgeB family protein.
 
    0.792
DVU_1465
CgeB family protein.
 
    0.785
DVU_1464
Identified by match to protein family HMM PF01075.
 
  
 0.782
DVU_0411
Identified by match to protein family HMM PF01075.
 
  
 0.775
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.774
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.773
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
  
  
 0.772
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
  
     0.770
DVU_1446
Identified by match to protein family HMM PF01075.
 
  
 0.769
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.769
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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