Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0042 | DVU_3207 | DVU_0042 | DVU_3207 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Identified by match to protein family HMM PF00773. | 0.655 |
| DVU_0042 | rluD/coaE | DVU_0042 | DVU_1024 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.840 |
| DVU_0042 | rpsA | DVU_0042 | DVU_3150 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.520 |
| DVU_0042 | trmH | DVU_0042 | DVU_2355 | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA (guanosine-2'-O-)-methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.729 |
| DVU_0810 | DVU_3207 | DVU_0810 | DVU_3207 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF00773. | 0.678 |
| DVU_0810 | rluD/coaE | DVU_0810 | DVU_1024 | Hypothetical protein; Identified by Glimmer2; putative. | Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.423 |
| DVU_1082 | DVU_3207 | DVU_1082 | DVU_3207 | 3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612. | Identified by match to protein family HMM PF00773. | 0.846 |
| DVU_1082 | ksgA | DVU_1082 | DVU_1797 | 3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.769 |
| DVU_1082 | rpsA | DVU_1082 | DVU_3150 | 3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.922 |
| DVU_3206 | DVU_3207 | DVU_3206 | DVU_3207 | Phosphoribosylaminoimidazolecarboxamide formyltransferase, putative; Identified by similarity to SP:P12048; match to protein family HMM PF01808. | Identified by match to protein family HMM PF00773. | 0.826 |
| DVU_3206 | plsY | DVU_3206 | DVU_3208 | Phosphoribosylaminoimidazolecarboxamide formyltransferase, putative; Identified by similarity to SP:P12048; match to protein family HMM PF01808. | Membrane protein, putative; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.729 |
| DVU_3207 | DVU_0042 | DVU_3207 | DVU_0042 | Identified by match to protein family HMM PF00773. | RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.655 |
| DVU_3207 | DVU_0810 | DVU_3207 | DVU_0810 | Identified by match to protein family HMM PF00773. | Hypothetical protein; Identified by Glimmer2; putative. | 0.678 |
| DVU_3207 | DVU_1082 | DVU_3207 | DVU_1082 | Identified by match to protein family HMM PF00773. | 3'- 5' exonuclease domain protein; Identified by match to protein family HMM PF01612. | 0.846 |
| DVU_3207 | DVU_3206 | DVU_3207 | DVU_3206 | Identified by match to protein family HMM PF00773. | Phosphoribosylaminoimidazolecarboxamide formyltransferase, putative; Identified by similarity to SP:P12048; match to protein family HMM PF01808. | 0.826 |
| DVU_3207 | ispD | DVU_3207 | DVU_1454 | Identified by match to protein family HMM PF00773. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.681 |
| DVU_3207 | ksgA | DVU_3207 | DVU_1797 | Identified by match to protein family HMM PF00773. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.654 |
| DVU_3207 | plsY | DVU_3207 | DVU_3208 | Identified by match to protein family HMM PF00773. | Membrane protein, putative; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. | 0.777 |
| DVU_3207 | rluD/coaE | DVU_3207 | DVU_1024 | Identified by match to protein family HMM PF00773. | Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.877 |
| DVU_3207 | rpsA | DVU_3207 | DVU_3150 | Identified by match to protein family HMM PF00773. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.640 |
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