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cheY-3 cheY-3 cheA-1 cheA-1 cheA-3 cheA-3 cheA-2 cheA-2 fliM fliM DVU_0302 DVU_0302 DVU_1458 DVU_1458 fliN fliN DVU_2770 DVU_2770 DVU_0449 DVU_0449 fliA fliA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
cheY-3Chemotaxis protein CheY; Identified by similarity to SP:Q51455; match to protein family HMM PF00072. (126 aa)    
Predicted Functional Partners:
cheA-1
Chemotaxis protein CheA; Identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 0.989
cheA-3
Chemotaxis protein CheA; Identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 0.989
cheA-2
Chemotaxis protein CheA; Identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
  
 0.987
fliM
Flagellar motor switch protein FliM; Identified by similarity to SP:P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.
 
 
 0.980
DVU_0302
Chemotaxis protein CheX, putative; Identified by similarity to GP:3493637.
 
 0.977
DVU_1458
Chemotaxis protein CheZ, putative; Identified by similarity to SP:P07800.
 
 0.968
fliN
Flagellar motor switch protein FliN; Identified by similarity to SP:P15070; match to protein family HMM PF01052.
 
 
 0.959
DVU_2770
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.950
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.947
fliA
RNA polymerase sigma factor for flagellar operon FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.943
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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