DVU_3240 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_3240

Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. (329 aa)

Predicted Functional Partners:

DVU_3241

0.786

DVU_3239

0.735

DVU_0633

0.697

DVU_0784

0.633

mtgA

0.608

DVU_2371

0.577

mltG

0.545

lepB

0.518

fliM

0.508

DVU_3238

0.477

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0633	DVU_2371	DVU_0633	DVU_2371	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520.	0.459
DVU_0633	DVU_3240	DVU_0633	DVU_3240	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.697
DVU_0633	mltG	DVU_0633	DVU_3069	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Conserved hypothetical protein TIGR00247; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.	0.562
DVU_0633	mtgA	DVU_0633	DVU_2296	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.	0.510
DVU_0784	DVU_3240	DVU_0784	DVU_3240	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.633
DVU_2371	DVU_0633	DVU_2371	DVU_0633	N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.459
DVU_2371	DVU_3240	DVU_2371	DVU_3240	N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.577
DVU_2371	mtgA	DVU_2371	DVU_2296	N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520.	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.	0.464
DVU_3238	DVU_3239	DVU_3238	DVU_3239	Response regulator; Identified by match to protein family HMM PF00072.	Identified by match to protein family HMM PF01569.	0.441
DVU_3238	DVU_3240	DVU_3238	DVU_3240	Response regulator; Identified by match to protein family HMM PF00072.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.477
DVU_3238	DVU_3241	DVU_3238	DVU_3241	Response regulator; Identified by match to protein family HMM PF00072.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171.	0.404
DVU_3238	fliM	DVU_3238	DVU_0910	Response regulator; Identified by match to protein family HMM PF00072.	Flagellar motor switch protein FliM; Identified by similarity to SP:P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.	0.481
DVU_3239	DVU_3238	DVU_3239	DVU_3238	Identified by match to protein family HMM PF01569.	Response regulator; Identified by match to protein family HMM PF00072.	0.441
DVU_3239	DVU_3240	DVU_3239	DVU_3240	Identified by match to protein family HMM PF01569.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.735
DVU_3239	DVU_3241	DVU_3239	DVU_3241	Identified by match to protein family HMM PF01569.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171.	0.721
DVU_3240	DVU_0633	DVU_3240	DVU_0633	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.697
DVU_3240	DVU_0784	DVU_3240	DVU_0784	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519.	0.633
DVU_3240	DVU_2371	DVU_3240	DVU_2371	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520.	0.577
DVU_3240	DVU_3238	DVU_3240	DVU_3238	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Response regulator; Identified by match to protein family HMM PF00072.	0.477
DVU_3240	DVU_3239	DVU_3240	DVU_3239	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Identified by match to protein family HMM PF01569.	0.735

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About