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DVU_3253 DVU_3253 DVU_3254 DVU_3254 DVU_3255 DVU_3255 rplK rplK putA putA DVU_3294 DVU_3294 DVU_3252 DVU_3252 mutM mutM DVU_0810 DVU_0810 paaK-2 paaK-2 DVU_0601 DVU_0601
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_3253Phenylacetate-coenzyme A ligase, putative; Identified by similarity to SP:P76085. (421 aa)    
Predicted Functional Partners:
DVU_3254
PDZ domain protein; Identified by match to protein family HMM PF00595.
       0.800
DVU_3255
Transcriptional regulator, CopG family; Identified by match to protein family HMM PF01402.
  
    0.657
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.647
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.607
DVU_3294
Aldehyde dehydrogenase (NADP) family protein; Identified by match to protein family HMM PF00171.
  
 
 0.592
DVU_3252
Hypothetical protein; Identified by Glimmer2; putative.
       0.542
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.515
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.493
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
   
0.417
DVU_0601
Phenylacetic acid degradation protein PaaI; Identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
  
 0.413
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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