Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_3272 | DVU_3276 | DVU_3272 | DVU_3276 | TPR domain protein; Identified by match to protein family HMM PF00515. | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | 0.644 |
DVU_3272 | DVU_3277 | DVU_3272 | DVU_3277 | TPR domain protein; Identified by match to protein family HMM PF00515. | Hypothetical protein; Identified by Glimmer2; putative. | 0.406 |
DVU_3272 | DVU_3278 | DVU_3272 | DVU_3278 | TPR domain protein; Identified by match to protein family HMM PF00515. | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.494 |
DVU_3276 | DVU_3272 | DVU_3276 | DVU_3272 | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.644 |
DVU_3276 | DVU_3277 | DVU_3276 | DVU_3277 | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | Hypothetical protein; Identified by Glimmer2; putative. | 0.553 |
DVU_3276 | DVU_3278 | DVU_3276 | DVU_3278 | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.558 |
DVU_3277 | DVU_3272 | DVU_3277 | DVU_3272 | Hypothetical protein; Identified by Glimmer2; putative. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.406 |
DVU_3277 | DVU_3276 | DVU_3277 | DVU_3276 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | 0.553 |
DVU_3277 | DVU_3278 | DVU_3277 | DVU_3278 | Hypothetical protein; Identified by Glimmer2; putative. | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.773 |
DVU_3277 | cobT | DVU_3277 | DVU_3279 | Hypothetical protein; Identified by Glimmer2; putative. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.532 |
DVU_3278 | DVU_3272 | DVU_3278 | DVU_3272 | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | TPR domain protein; Identified by match to protein family HMM PF00515. | 0.494 |
DVU_3278 | DVU_3276 | DVU_3278 | DVU_3276 | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Identified by similarity to SP:P08813; match to protein family HMM PF00037. | 0.558 |
DVU_3278 | DVU_3277 | DVU_3278 | DVU_3277 | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
DVU_3278 | cobT | DVU_3278 | DVU_3279 | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.529 |
cobT | DVU_3277 | DVU_3279 | DVU_3277 | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | Hypothetical protein; Identified by Glimmer2; putative. | 0.532 |
cobT | DVU_3278 | DVU_3279 | DVU_3278 | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.529 |