STRINGSTRING
DVU_3282 DVU_3282 glnB-1 glnB-1 DVU_1502 DVU_1502 pspC pspC DVU_0250 DVU_0250 DVU_1435 DVU_1435 DVU_0245 DVU_0245 DVU_0742 DVU_0742 DVU_0251 DVU_0251
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3282Identified by match to protein family HMM PF03747. (299 aa)    
Predicted Functional Partners:
glnB-1
Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 
 0.794
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
   
 
 0.766
pspC
Phage shock protein C; Identified by similarity to SP:P23855; match to protein family HMM PF04024.
  
    0.481
DVU_0250
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.466
DVU_1435
Membrane protein, putative; Identified by similarity to OMNI:NTL03PA01784.
 
     0.426
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
 
     0.420
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.405
DVU_0251
Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.
 
    0.402
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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