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DVU_3314 DVU_3314 DVU_0021 DVU_0021 DVU_2997 DVU_2997 DVU_0357 DVU_0357 DVU_3273 DVU_3273 thrC thrC qrcD qrcD DVU_3274 DVU_3274 ackA ackA DVU_1685 DVU_1685 DVU_1768 DVU_1768
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
DVU_3314Peptidase, U32 family; Identified by match to protein family HMM PF01136. (658 aa)    
Predicted Functional Partners:
DVU_0021
Conserved domain protein; Identified by similarity to OMNI:AF0308.
 
  
 0.676
DVU_2997
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.638
DVU_0357
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML5790.
  
  
 0.629
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
     0.562
thrC
Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.
  
     0.508
qrcD
Molybdopterin oxidoreductase, transmembrane subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. The QrcD subunit anchors the protein complex to the membrane and likely interacts with the quinone pool.
  
     0.504
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.487
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
    0.468
DVU_1685
Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.460
DVU_1768
Identified by match to protein family HMM TIGR00231.
  
  
 0.422
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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