STRINGSTRING
DVU_3330 DVU_3330 DVU_3333 DVU_3333 DVU_3332 DVU_3332 DVU_3331 DVU_3331 DVU_3328 DVU_3328 DVU_3329 DVU_3329 DVU_2215 DVU_2215 DVU_2103 DVU_2103
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3330Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE1332. (91 aa)    
Predicted Functional Partners:
DVU_3333
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.611
DVU_3332
Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
    0.596
DVU_3331
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.570
DVU_3328
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.569
DVU_3329
Hypothetical protein; Identified by Glimmer2; putative.
       0.562
DVU_2215
Identified by match to protein family HMM PF00076.
      
 0.558
DVU_2103
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991.
   
  
 0.463
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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