STRINGSTRING
DVU_3333 DVU_3333 DVU_3331 DVU_3331 DVU_3332 DVU_3332 DVU_3330 DVU_3330 DVU_3329 DVU_3329 DVU_3328 DVU_3328
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3333Hypothetical protein; Identified by Glimmer2; putative. (152 aa)    
Predicted Functional Partners:
DVU_3331
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.801
DVU_3332
Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
    0.794
DVU_3330
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE1332.
  
    0.611
DVU_3329
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.425
DVU_3328
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.423
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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