STRINGSTRING
Meso_0112 Meso_0112 Meso_0110 Meso_0110 Meso_0111 Meso_0111 Meso_0104 Meso_0104 Meso_0119 Meso_0119 Meso_0113 Meso_0113 Meso_0118 Meso_0118 Meso_0107 Meso_0107 Meso_0305 Meso_0305 Meso_0109 Meso_0109 Meso_0106 Meso_0106
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0112TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: dvu:DVUA0102 type III secretion inner membrane protein. (271 aa)    
Predicted Functional Partners:
Meso_0110
TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: plu:plu3771 type III secretion component protein SctR.
 
 
 0.996
Meso_0111
PFAM: export protein FliQ, family 3; KEGG: dvu:DVUA0103 type III secretion protein, HrpO family.
 
 
 0.995
Meso_0104
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF; KEGG: bja:blr1813 nodulation prrotein nolT.
 
 
 0.991
Meso_0119
PFAM: type III secretion FHIPEP; KEGG: yps:pYV0060 putative membrane-bound Yop protein.
 
 
 0.978
Meso_0113
PFAM: type III secretion exporter; KEGG: yps:pYV0074 putative type III secretion protein.
 
 
 0.962
Meso_0118
PFAM: NolW-like; KEGG: bte:BTH_II0777 type II/III secretion system protein.
 
 
 0.960
Meso_0107
KEGG: dvu:DVUA0119 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; SMART: ATPase.
 
  
 0.935
Meso_0305
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.878
Meso_0109
PFAM: surface presentation of antigens (SPOA) protein; KEGG: cvi:CV2625 surface presentation of antigens; secretory proteins.
  
  
 0.869
Meso_0106
Hypothetical protein.
  
  
 0.811
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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