STRINGSTRING
Dbac_0226 Dbac_0226 Dbac_0227 Dbac_0227 Dbac_1153 Dbac_1153 Dbac_0160 Dbac_0160 Dbac_1961 Dbac_1961 Dbac_3250 Dbac_3250 Dbac_0228 Dbac_0228 Dbac_0225 Dbac_0225 Dbac_1303 Dbac_1303
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0226PFAM: HipA domain protein; KEGG: dvu:DVUA0152 hypothetical protein. (417 aa)    
Predicted Functional Partners:
Dbac_0227
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvl:Dvul_2959 DNA-binding protein, putative.
 
 
 0.964
Dbac_1153
KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; helix-turn-helix domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; helix-turn-helix domain protein; PAS domain containing protein.
   
 
 0.856
Dbac_0160
SMART: helix-turn-helix domain protein; KEGG: rsq:Rsph17025_4195 hypothetical protein.
 
 
 0.578
Dbac_1961
KEGG: dde:Dde_0580 cytochrome c family protein.
  
     0.526
Dbac_3250
Putative transcriptional regulator, GntR family; KEGG: dde:Dde_3684 hypothetical protein.
  
    0.483
Dbac_0228
KEGG: ppd:Ppro_2608 hypothetical protein.
       0.442
Dbac_0225
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1234 PfpI family intracellular peptidase.
       0.413
Dbac_1303
PFAM: Domain of unknown function DUF1814; KEGG: dol:Dole_3139 hypothetical protein.
 
     0.405
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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