Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Dde_0081 | Dde_0082 | TIGRFAM: Iron hydrogenase, subset; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. | PFAM: Iron hydrogenase, small subunit-like; KEGG: dma:DMR_12950 Fe hydrogenase small subunit; SMART: Iron hydrogenase, small subunit-like. | 0.986 |
Dde_0081 | Dde_0084 | TIGRFAM: Iron hydrogenase, subset; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. | Hypothetical protein. | 0.415 |
Dde_0082 | Dde_0081 | PFAM: Iron hydrogenase, small subunit-like; KEGG: dma:DMR_12950 Fe hydrogenase small subunit; SMART: Iron hydrogenase, small subunit-like. | TIGRFAM: Iron hydrogenase, subset; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. | 0.986 |
Dde_0082 | Dde_0084 | PFAM: Iron hydrogenase, small subunit-like; KEGG: dma:DMR_12950 Fe hydrogenase small subunit; SMART: Iron hydrogenase, small subunit-like. | Hypothetical protein. | 0.420 |
Dde_0084 | Dde_0081 | Hypothetical protein. | TIGRFAM: Iron hydrogenase, subset; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. | 0.415 |
Dde_0084 | Dde_0082 | Hypothetical protein. | PFAM: Iron hydrogenase, small subunit-like; KEGG: dma:DMR_12950 Fe hydrogenase small subunit; SMART: Iron hydrogenase, small subunit-like. | 0.420 |