STRINGSTRING
Dde_0130 Dde_0130 Dde_1180 Dde_1180 Dde_0416 Dde_0416 Dde_0128 Dde_0128 Dde_1773 Dde_1773 Dde_3654 Dde_3654 Dde_3733 Dde_3733 Dde_2120 Dde_2120 Dde_2429 Dde_2429 Dde_2658 Dde_2658 Dde_2921 Dde_2921
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0130KEGG: dda:Dd703_2190 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal. (259 aa)    
Predicted Functional Partners:
Dde_1180
TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, phosphocarrier HPr protein; Dihydroxyacetone kinase, subunit phosphotransferase; KEGG: dvm:DvMF_2584 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, fructose subfamily IIA component; Belongs to the PEP-utilizing enzyme family.
 
  
 0.684
Dde_0416
KEGG: dth:DICTH_0482 myo-inositol catabolism protein.
 
  
 0.674
Dde_0128
PFAM: Protein of unknown function, DUF1537; KEGG: pjd:Pjdr2_3637 type III effector Hrp-dependent outers.
 
  
 0.623
Dde_1773
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: das:Daes_1477 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
 
  
 0.623
Dde_3654
KEGG: dsa:Desal_0506 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.
  
   
 0.623
Dde_3733
KEGG: azl:AZL_e03080 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase.
 
  
 0.566
Dde_2120
TIGRFAM: Ribose 5-phosphate isomerase B; Ribose/galactose isomerase; KEGG: dvl:Dvul_1553 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: Ribose/galactose isomerase.
  
  
 0.554
Dde_2429
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.534
Dde_2658
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_1004 short-chain dehydrogenase/reductase SDR.
  
  
 0.534
Dde_2921
KEGG: dvl:Dvul_2612 hypothetical protein.
  
  
 0.534
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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