STRINGSTRING
Dde_0253 Dde_0253 asd asd Dde_0255 Dde_0255 Dde_3195 Dde_3195 Dde_0252 Dde_0252 Dde_2708 Dde_2708 Dde_0251 Dde_0251 Dde_0250 Dde_0250 Dde_3237 Dde_3237
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0253Hemerythrin-like metal-binding protein; TIGRFAM: Haemerythrin-like, metal-binding; KEGG: dvl:Dvul_0327 hemerythrin-like metal-binding protein. (150 aa)    
Predicted Functional Partners:
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
    0.629
Dde_0255
PFAM: Aminotransferase, class IV; KEGG: dvm:DvMF_2383 aminotransferase class IV.
       0.571
Dde_3195
PFAM: Flavodoxin/nitric oxide synthase; KEGG: dvm:DvMF_2479 beta-lactamase domain protein.
  
  
 0.569
Dde_0252
PFAM: Protein of unknown function DUF606; KEGG: dvm:DvMF_2381 protein of unknown function DUF606.
       0.531
Dde_2708
KEGG: dvm:DvMF_1396 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA).
    
   0.527
Dde_0251
PFAM: NUDIX hydrolase domain; KEGG: dvm:DvMF_2380 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.512
Dde_0250
KEGG: dvu:DVU3052 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
       0.421
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
    
 
 0.415
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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