STRINGSTRING
Dde_0263 Dde_0263 Dde_1941 Dde_1941 Dde_0816 Dde_0816 Dde_1171 Dde_1171 Dde_3022 Dde_3022 Dde_2518 Dde_2518 Dde_1697 Dde_1697 Dde_0817 Dde_0817 Dde_0544 Dde_0544 Dde_1686 Dde_1686 Dde_0370 Dde_0370
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
Dde_0263KEGG: vsp:VS_1816 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; MASE1; SMART: Metal-dependent phosphohydrolase, HD region. (536 aa)    
Predicted Functional Partners:
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
 
 
 0.826
Dde_0816
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: glo:Glov_2955 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted.
 
  
 0.703
Dde_1171
Diguanylate cyclase; KEGG: dpr:Despr_1760 PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like metal-binding domain-containing protein; TIGRFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted.
 
 
 0.666
Dde_3022
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dsa:Desal_0927 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted.
 
  
 0.634
Dde_2518
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: dvl:Dvul_0418 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAC motif; PAS.
 
 0.618
Dde_1697
Multi-sensor hybrid histidine kinase; KEGG: dma:DMR_25470 two-component hybrid sensor and regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoaccep [...]
 
 
 0.602
Dde_0817
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cystathionine beta-synthase, core; KEGG: dar:Daro_3975 GGDEF; SMART: Diguanylate cyclase, predicted; Cystathionine beta-synthase, core; PAS.
 
 0.597
Dde_0544
KEGG: dsa:Desal_2870 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker [...]
 
 0.584
Dde_1686
Hpt domain protein; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: dvm:DvMF_0217 Hpt protein.
  
 
 0.584
Dde_0370
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2273 PAS/PAC sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; ATP-binding region, ATPase-like.
  
 
 0.564
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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