STRINGSTRING
Dde_0320 Dde_0320 Dde_0321 Dde_0321 Dde_0322 Dde_0322 Dde_0319 Dde_0319 Dde_0324 Dde_0324 Dde_0328 Dde_0328 Dde_1941 Dde_1941 Dde_0695 Dde_0695 Dde_0327 Dde_0327 Dde_1285 Dde_1285 Dde_0692 Dde_0692
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0320KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region. (576 aa)    
Predicted Functional Partners:
Dde_0321
KEGG: dvm:DvMF_1769 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
   0.970
Dde_0322
SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sfu:Sfum_0655 hypothetical protein.
 
 
 
 0.902
Dde_0319
KEGG: dvm:DvMF_1212 hypothetical protein.
 
     0.870
Dde_0324
KEGG: tye:THEYE_A0739 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 0.850
Dde_0328
KEGG: das:Daes_0066 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 0.794
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
 
 
0.776
Dde_0695
KEGG: dal:Dalk_2250 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 0.750
Dde_0327
Response regulator receiver protein; KEGG: dat:HRM2_40310 sigma-54 dependent two component transcriptional regulator (fis family protein); PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 0.711
Dde_1285
Response regulator receiver protein; KEGG: jan:Jann_2988 histidine kinase; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 
 
 0.693
Dde_0692
KEGG: sfu:Sfum_0648 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
 
 
   0.676
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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