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Dde_0359 Dde_0359 Dde_0362 Dde_0362 Dde_0361 Dde_0361 lpxA lpxA acpP acpP Dde_2659 Dde_2659 ribBA ribBA Dde_0335 Dde_0335 bamA bamA Dde_1371 Dde_1371 Dde_1787 Dde_1787
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0359TIGRFAM: Sialic acid O-acyltransferase, NeuD; KEGG: gur:Gura_4087 carbonic anhydrase. (213 aa)    
Predicted Functional Partners:
Dde_0362
PFAM: Bacterial sugar transferase; Glycosyl transferase, group 1; KEGG: dsa:Desal_3614 glycosyl transferase group 1.
   
 0.814
Dde_0361
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dsa:Desal_3619 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.716
lpxA
Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
 
 0.716
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.626
Dde_2659
PFAM: Phosphopantetheine-binding; KEGG: dvl:Dvul_0686 acyl carrier protein.
   
 
 0.626
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.608
Dde_0335
KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ; KEGG: dvm:DvMF_2308 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.594
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.567
Dde_1371
PFAM: Outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_0893 outer membrane chaperone Skp (OmpH).
  
  
 0.562
Dde_1787
PFAM: Outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_1594 outer membrane chaperone Skp (OmpH).
  
  
 0.562
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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