STRINGSTRING
Dde_0454 Dde_0454 Dde_0455 Dde_0455 Dde_0456 Dde_0456 Dde_2155 Dde_2155 Dde_3630 Dde_3630 Dde_0452 Dde_0452 Dde_0453 Dde_0453 Dde_2156 Dde_2156 Dde_0448 Dde_0448 Dde_0449 Dde_0449 Dde_0450 Dde_0450
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0454PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_0847 biopolymer transport protein. (221 aa)    
Predicted Functional Partners:
Dde_0455
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR.
 
 
 0.984
Dde_0456
TonB family protein; TIGRFAM: TonB, C-terminal; KEGG: dps:DP2971 TonB protein.
 
 
 0.951
Dde_2155
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR.
 
 
 0.936
Dde_3630
Protein TolR; KEGG: dvl:Dvul_0281 biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.894
Dde_0452
KEGG: das:Daes_0573 hypothetical protein.
 
  
 0.843
Dde_0453
PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel.
 
    
0.842
Dde_2156
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.824
Dde_0448
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: drt:Dret_0180 extracellular solute-binding protein family 5.
  
  
 0.780
Dde_0449
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: drt:Dret_0179 binding-protein-dependent transport systems inner membrane component.
       0.773
Dde_0450
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_1540 binding-protein-dependent transport systems inner membrane component.
       0.773
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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