STRINGSTRING
Dde_0456 Dde_0456 Dde_0455 Dde_0455 Dde_0453 Dde_0453 Dde_0454 Dde_0454 Dde_1600 Dde_1600 Dde_0447 Dde_0447 Dde_2155 Dde_2155 Dde_0452 Dde_0452 Dde_2153 Dde_2153 Dde_2154 Dde_2154 Dde_3630 Dde_3630
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0456TonB family protein; TIGRFAM: TonB, C-terminal; KEGG: dps:DP2971 TonB protein. (223 aa)    
Predicted Functional Partners:
Dde_0455
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR.
 
 
 0.971
Dde_0453
PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel.
 
 
 0.965
Dde_0454
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_0847 biopolymer transport protein.
 
 
 0.951
Dde_1600
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dbr:Deba_1127 TonB-dependent receptor.
 
 
 0.935
Dde_0447
PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dba:Dbac_2599 TonB-dependent receptor plug.
  
 
 0.931
Dde_2155
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR.
 
 
 0.884
Dde_0452
KEGG: das:Daes_0573 hypothetical protein.
 
   
 0.858
Dde_2153
PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel.
 
 
 0.852
Dde_2154
PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0575 MotA/TolQ/ExbB proton channel.
 
 
 0.835
Dde_3630
Protein TolR; KEGG: dvl:Dvul_0281 biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.831
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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