STRINGSTRING
Dde_0477 Dde_0477 Dde_0476 Dde_0476 Dde_0473 Dde_0473 Dde_0474 Dde_0474 Dde_0475 Dde_0475
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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Experiments
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[Homology]
Score
Dde_0477Transposase IS200-family protein; PFAM: Transposase IS200-like; KEGG: yen:YE1694 transposase for IS1541. (128 aa)    
Predicted Functional Partners:
Dde_0476
Hydrogenase FeS protein, cytoplasmic; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: clj:CLJU_c20030 Fe-S-cluster-containing hydrogenase component.
       0.436
Dde_0473
TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dps:DP0481 formate dehydrogenase, chain A; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.428
Dde_0474
Hydrogenase FeS protein, cytoplasmic; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: sth:STH3294 electron transport protein.
       0.428
Dde_0475
Fe-only hydrogenase, large & small subunits, cytoplasmic; SMART: Iron hydrogenase, small subunit-like; TIGRFAM: Iron hydrogenase, subset; KEGG: dps:DP0479 Fe-center hydrogenase, large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; Iron hydrogenase, small subunit-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
       0.428
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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