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Dde_0480 Dde_0480 Dde_0481 Dde_0481 Dde_2931 Dde_2931 Dde_2351 Dde_2351 Dde_2327 Dde_2327 Dde_1715 Dde_1715 rny rny Dde_0075 Dde_0075 Dde_0385 Dde_0385 Dde_0564 Dde_0564 Dde_1714 Dde_1714
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0480PFAM: O-antigen ligase-related; KEGG: dvm:DvMF_3018 O-antigen polymerase. (452 aa)    
Predicted Functional Partners:
Dde_0481
TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase.
  
  
 0.897
Dde_2931
TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dvm:DvMF_2691 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase.
  
  
 0.757
Dde_2351
KEGG: dvm:DvMF_0871 hypothetical protein.
 
     0.725
Dde_2327
KEGG: dvm:DvMF_3199 hypothetical protein.
 
  
 0.703
Dde_1715
KEGG: dvm:DvMF_0250 CgeB family protein.
 
  
 0.686
rny
2,3 cyclic-nucleotide 2-phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
  
 0.683
Dde_0075
PFAM: Glycosyl transferase, group 1; KEGG: dvl:Dvul_0186 hypothetical protein.
 
  
 0.652
Dde_0385
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.642
Dde_0564
KEGG: dvm:DvMF_1546 hypothetical protein.
  
     0.622
Dde_1714
PFAM: Glycosyl transferase, family 9; KEGG: dvm:DvMF_0249 glycosyl transferase family 9.
 
  
 0.619
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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