STRINGSTRING
Dde_0486 Dde_0486 Dde_0337 Dde_0337 Dde_3758 Dde_3758 Dde_2556 Dde_2556 Dde_0215 Dde_0215 Dde_0428 Dde_0428 Dde_0487 Dde_0487 Dde_3018 Dde_3018 Dde_1616 Dde_1616 Dde_2484 Dde_2484
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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Experiments
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Textmining
[Homology]
Score
Dde_0486KEGG: dma:DMR_p1_00100 putative transposase for insertion sequence element. (451 aa)    
Predicted Functional Partners:
Dde_0337
PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU3287 glycosyl transferase group 2 family protein.
  
     0.603
Dde_3758
KEGG: dvl:Dvul_2627 hypothetical protein.
  
     0.555
Dde_2556
TIGRFAM: Phage uncharacterised protein, C-terminal; KEGG: dvl:Dvul_0639 hypothetical protein.
  
     0.484
Dde_0215
KEGG: dvm:DvMF_1927 glycosyl transferase family 2.
  
     0.482
Dde_0428
PFAM: Glycosyl transferase, group 1; KEGG: dvu:DVU2995 glycosyl transferase group 1 family protein.
  
     0.478
Dde_0487
KEGG: dvu:DVU2006 hypothetical protein.
       0.469
Dde_3018
Flagellin domain protein; PFAM: Flagellin, N-terminal; KEGG: dvm:DvMF_1474 flagellin domain protein.
  
     0.445
Dde_1616
KEGG: dvl:Dvul_0509 metallo-beta-lactamase family protein.
  
     0.423
Dde_2484
PFAM: Protein of unknown function DUF88; KEGG: dvm:DvMF_3051 protein of unknown function DUF88.
  
     0.419
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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