STRINGSTRING
Dde_0498 Dde_0498 Dde_0493 Dde_0493 fur fur Dde_1313 Dde_1313 Dde_0487 Dde_0487 Dde_1312 Dde_1312 Dde_0757 Dde_0757 Dde_1566 Dde_1566 Dde_1606 Dde_1606 Dde_1720 Dde_1720 Dde_1803 Dde_1803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0498Cation transport ATPase, iron related protein; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dsa:Desal_0101 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase. (700 aa)    
Predicted Functional Partners:
Dde_0493
KEGG: dap:Dacet_2133 hypothetical protein.
 
     0.813
fur
Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: das:Daes_1894 ferric-uptake regulator; Belongs to the Fur family.
     
 0.786
Dde_1313
TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Copper ion-binding; ATPase, P-type, heavy metal translocating; KEGG: dvm:DvMF_3170 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase.
 
 
0.746
Dde_0487
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.708
Dde_1312
PFAM: Heavy metal transport/detoxification protein; KEGG: dvm:DvMF_3169 heavy metal transport/detoxification protein.
  
 
 0.677
Dde_0757
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.628
Dde_1566
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.628
Dde_1606
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.628
Dde_1720
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.628
Dde_1803
KEGG: dvu:DVU2006 hypothetical protein.
  
 
 0.628
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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