STRINGSTRING
Dde_0872 Dde_0872 acpP acpP Dde_2659 Dde_2659 Dde_1609 Dde_1609 Dde_0873 Dde_0873 Dde_2931 Dde_2931 Dde_0220 Dde_0220 Dde_0871 Dde_0871 Dde_2042 Dde_2042 Dde_3678 Dde_3678 Dde_1416 Dde_1416
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_0872PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: swo:Swol_0117 alginate O-acetyltransferase; Belongs to the membrane-bound acyltransferase family. (474 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.956
Dde_2659
PFAM: Phosphopantetheine-binding; KEGG: dvl:Dvul_0686 acyl carrier protein.
  
 
 0.956
Dde_1609
Amino acid adenylation domain protein; SMART: Polyketide synthase, beta-ketoacyl synthase region; TIGRFAM: Amino acid adenylation; KEGG: dae:Dtox_2675 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; Beta-ketoacyl synthase, C-terminal; Condensation domain; Beta-ketoacyl synthase, N-terminal; Phosphopantetheine-binding; Acyl transferase; Non-ribosomal peptide synthetase.
 
  
 0.951
Dde_0873
KEGG: abu:Abu_1806 hypothetical protein.
       0.779
Dde_2931
TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dvm:DvMF_2691 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase.
  
  
 0.767
Dde_0220
KEGG: dvm:DvMF_0627 Sel1 domain protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like.
  
 
 0.481
Dde_0871
KEGG: dma:DMR_19500 putative molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1.
       0.477
Dde_2042
TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvm:DvMF_0282 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation.
  
  
 0.436
Dde_3678
PFAM: Glycosyl transferase, family 2; KEGG: npu:Npun_R1218 filamentous haemagglutinin outer membrane protein.
  
 
 0.422
Dde_1416
TIGRFAM: Type 1 secretion, target domain, C-terminal; KEGG: swp:swp_1383 hemolysin-type calcium-binding region.
  
  
 0.418
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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