STRINGSTRING
Dde_0899 Dde_0899 Dde_0900 Dde_0900 Dde_0895 Dde_0895 Dde_0896 Dde_0896 Dde_0897 Dde_0897
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0899KEGG: sfu:Sfum_3782 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Dde_0900
TIGRFAM: RNA polymerase sigma-70; KEGG: dbr:Deba_1837 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.467
Dde_0895
KEGG: dbr:Deba_1843 bacteriophage-related protein.
       0.401
Dde_0896
KEGG: dly:Dehly_1703 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal.
       0.400
Dde_0897
KEGG: das:Daes_1578 putative phage-like protein.
       0.400
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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