STRINGSTRING
Dde_0901 Dde_0901 Dde_0902 Dde_0902 Dde_0903 Dde_0903 Dde_0904 Dde_0904 Dde_0905 Dde_0905 Dde_0907 Dde_0907 Dde_0906 Dde_0906 Dde_0900 Dde_0900
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0901KEGG: sfu:Sfum_3784 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Dde_0902
KEGG: dly:Dehly_1694 hypothetical protein.
       0.786
Dde_0903
KEGG: sfu:Sfum_3786 hypothetical protein.
       0.706
Dde_0904
PFAM: Protein of unknown function DUF669; KEGG: das:Daes_1590 hypothetical protein.
       0.706
Dde_0905
PFAM: ERCC4 domain; KEGG: dly:Dehly_1691 ERCC4 domain-containing protein.
       0.702
Dde_0907
PFAM: DNA primase, catalytic core, N-terminal; KEGG: geb:GM18_2979 DNA primase catalytic core domain-containing protein.
       0.697
Dde_0906
KEGG: dly:Dehly_1690 UvrD/REP helicase.
       0.693
Dde_0900
TIGRFAM: RNA polymerase sigma-70; KEGG: dbr:Deba_1837 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.541
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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