STRINGSTRING
Dde_0907 Dde_0907 Dde_0903 Dde_0903 Dde_0905 Dde_0905 Dde_1921 Dde_1921 dnaG dnaG Dde_0900 Dde_0900 Dde_0906 Dde_0906 Dde_1928 Dde_1928 Dde_1409 Dde_1409 Dde_1925 Dde_1925 Dde_1926 Dde_1926
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0907PFAM: DNA primase, catalytic core, N-terminal; KEGG: geb:GM18_2979 DNA primase catalytic core domain-containing protein. (1100 aa)    
Predicted Functional Partners:
Dde_0903
KEGG: sfu:Sfum_3786 hypothetical protein.
 
    0.951
Dde_0905
PFAM: ERCC4 domain; KEGG: dly:Dehly_1691 ERCC4 domain-containing protein.
 
     0.947
Dde_1921
PFAM: DNA primase, catalytic core, N-terminal; KEGG: sfu:Sfum_3790 DNA primase catalytic core.
  
  
 
0.901
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 
0.900
Dde_0900
TIGRFAM: RNA polymerase sigma-70; KEGG: dbr:Deba_1837 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.896
Dde_0906
KEGG: dly:Dehly_1690 UvrD/REP helicase.
 
  
 0.843
Dde_1928
KEGG: sfu:Sfum_3783 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
 
 
 0.814
Dde_1409
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.805
Dde_1925
KEGG: sfu:Sfum_3786 hypothetical protein.
 
    0.799
Dde_1926
KEGG: dly:Dehly_1694 hypothetical protein.
 
    0.795
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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