STRINGSTRING
Dde_0913 Dde_0913 Dde_0912 Dde_0912 Dde_0914 Dde_0914 Dde_0915 Dde_0915 Dde_0916 Dde_0916 Dde_0917 Dde_0917
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0913KEGG: geb:GM18_2972 hypothetical protein; Belongs to the 'phage' integrase family. (124 aa)    
Predicted Functional Partners:
Dde_0912
Integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: dbr:Deba_1826 integrase family protein; Belongs to the 'phage' integrase family.
       0.784
Dde_0914
KEGG: dly:Dehly_1683 hypothetical protein.
       0.686
Dde_0915
KEGG: sfu:Sfum_3799 hypothetical protein.
       0.492
Dde_0916
KEGG: sfu:Sfum_3800 hypothetical protein.
       0.492
Dde_0917
KEGG: dbr:Deba_1821 hypothetical protein.
       0.492
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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