STRINGSTRING
Dde_0932 Dde_0932 Dde_0933 Dde_0933 Dde_0931 Dde_0931 Dde_0922 Dde_0922 Dde_0934 Dde_0934 Dde_0937 Dde_0937 Dde_1904 Dde_1904 Dde_0917 Dde_0917 Dde_1887 Dde_1887 Dde_1886 Dde_1886 Dde_1889 Dde_1889
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0932PFAM: Conserved hypothetical protein CHP02241, phage tail region protein; KEGG: sfu:Sfum_3816 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Dde_0933
KEGG: dbr:Deba_1799 hypothetical protein.
 
     0.940
Dde_0931
KEGG: geb:GM18_2954 phage tail sheath protein.
 
     0.939
Dde_0922
Site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: geb:GM18_2963 adenine-specific DNA-methyltransferase; SMART: Basic-leucine zipper (bZIP) transcription factor.
 
     0.901
Dde_0934
KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
 
     0.877
Dde_0937
KEGG: dbr:Deba_1795 hypothetical protein.
 
     0.866
Dde_1904
KEGG: dbr:Deba_1816 site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase.
 
     0.823
Dde_0917
KEGG: dbr:Deba_1821 hypothetical protein.
 
     0.814
Dde_1887
KEGG: das:Daes_1624 hypothetical protein.
 
     0.786
Dde_1886
KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
 
     0.783
Dde_1889
KEGG: geb:GM18_2954 phage tail sheath protein.
 
     0.782
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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