STRINGSTRING
Dde_0950 Dde_0950 Dde_0949 Dde_0949 Dde_0948 Dde_0948 Dde_0947 Dde_0947 Dde_0945 Dde_0945 Dde_0946 Dde_0946 Dde_4018 Dde_4018 Dde_0943 Dde_0943 Dde_0944 Dde_0944 Dde_4016 Dde_4016 Dde_0953 Dde_0953
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0950KEGG: sfu:Sfum_3835 hypothetical protein. (329 aa)    
Predicted Functional Partners:
Dde_0949
KEGG: sfu:Sfum_3834 hypothetical protein.
       0.770
Dde_0948
KEGG: das:Daes_1640 phage tail protein; TIGRFAM: Phage tail protein; PFAM: Phage tail protein I.
       0.755
Dde_0947
PFAM: Baseplate assembly protein J-like, predicted; KEGG: das:Daes_1639 baseplate J family protein.
       0.741
Dde_0945
KEGG: sfu:Sfum_3830 hypothetical protein.
       0.532
Dde_0946
GPW/gp25 family protein; PFAM: GPW/gp25; KEGG: das:Daes_1638 gpW/GP25 family protein.
       0.532
Dde_4018
KEGG: das:Daes_1643 hypothetical protein.
       0.527
Dde_0943
KEGG: dly:Dehly_1645 PaaR repeat-containing protein.
       0.522
Dde_0944
KEGG: das:Daes_1636 hypothetical protein.
       0.516
Dde_4016
KEGG: dbr:Deba_1788 hypothetical protein.
       0.516
Dde_0953
KEGG: sfu:Sfum_3837 hypothetical protein.
       0.512
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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