STRINGSTRING
Dde_0963 Dde_0963 Dde_0962 Dde_0962 Dde_0960 Dde_0960 Dde_0961 Dde_0961 Dde_0965 Dde_0965 Dde_0966 Dde_0966 Dde_4019 Dde_4019 Dde_0967 Dde_0967 Dde_0959 Dde_0959 Dde_0547 Dde_0547 Dde_0958 Dde_0958
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0963PFAM: Patatin; KEGG: tin:Tint_1838 patatin. (335 aa)    
Predicted Functional Partners:
Dde_0962
KEGG: dau:Daud_2100 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.892
Dde_0960
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dap:Dacet_1489 transcriptional regulator, TetR family.
 
   
 0.890
Dde_0961
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
     0.885
Dde_0965
PFAM: Acriflavin resistance protein; KEGG: aco:Amico_0304 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.837
Dde_0966
KEGG: glo:Glov_2883 metal dependent phosphohydrolase; PFAM: Protein of unknown function DUF1113; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
 
     0.836
Dde_4019
Hypothetical protein.
       0.792
Dde_0967
KEGG: dap:Dacet_1487 CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase, BadF/BadG/BcrA/BcrD type.
       0.778
Dde_0959
AIG2 family protein; PFAM: AIG2-like; KEGG: dly:Dehly_1630 AIG2 family protein.
 
     0.554
Dde_0547
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: das:Daes_1194 DNA internalization-like competence protein ComEC/Rec2; SMART: Beta-lactamase-like.
     
 0.543
Dde_0958
KEGG: dly:Dehly_1631 glucosamine 6-phosphate synthetase-like protein.
 
     0.539
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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