node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_1098 | rimM | Dde_1098 | Dde_1097 | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.911 |
Dde_1098 | rplS | Dde_1098 | Dde_1095 | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.928 |
Dde_1098 | rpsF | Dde_1098 | Dde_1412 | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.410 |
Dde_1098 | rpsP | Dde_1098 | Dde_1099 | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.961 |
Dde_1098 | trmD | Dde_1098 | Dde_1096 | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.674 |
guaA | rimM | Dde_1470 | Dde_1097 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.928 |
guaA | rplM | Dde_1470 | Dde_2607 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.865 |
guaA | rplS | Dde_1470 | Dde_1095 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.853 |
guaA | rpsB | Dde_1470 | Dde_1133 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein S2; KEGG: dvm:DvMF_2924 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.786 |
guaA | rpsF | Dde_1470 | Dde_1412 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.878 |
guaA | rpsL | Dde_1470 | Dde_2263 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.885 |
guaA | rpsP | Dde_1470 | Dde_1099 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.512 |
guaA | rpsS | Dde_1470 | Dde_2253 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.784 |
guaA | trmD | Dde_1470 | Dde_1096 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.791 |
rimM | Dde_1098 | Dde_1097 | Dde_1098 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | KEGG: dsa:Desal_0196 hypothetical protein; Belongs to the UPF0109 family. | 0.911 |
rimM | guaA | Dde_1097 | Dde_1470 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.928 |
rimM | rplM | Dde_1097 | Dde_2607 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.910 |
rimM | rplS | Dde_1097 | Dde_1095 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.961 |
rimM | rpsB | Dde_1097 | Dde_1133 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Ribosomal protein S2; KEGG: dvm:DvMF_2924 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.916 |
rimM | rpsF | Dde_1097 | Dde_1412 | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.906 |